PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA30G00129
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 266aa    MW: 30136.5 Da    PI: 4.8335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA30G00129genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.23e-084284854
                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                rE+ RRdr++++f eL   l ++     +K +Ka+iL+ +++ +k+L
  AA30G00129 42 REKLRRDRLKEKFLELGNALDSN----RTKSDKASILTDTIQMLKDL 84
                9********************98....7****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.1313484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-1437105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-84090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-64284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1142106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.91E-64288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDQSKKQKTS TELDFAYDSS ASSSSSSSNL RNDQVSSGKV YREKLRRDRL KEKFLELGNA  60
LDSNRTKSDK ASILTDTIQM LKDLMAQVDE LKAEYSMLSQ ESRELMREKS ELREEKASLR  120
SDIEILNDQY QQKVKTMVPW FPPQYSYPIA ITQSLISMQP QLPPLQFYTS QDPKPTSTFI  180
PYLTSVNSLT EQDSKSNSNL SDQDNDQKNV ALELNLKLTA FSAQQDISEK EKEKSSTNSG  240
NSYCSYSPSQ AVQDSSSEIV NNILKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195330.22e-75transcription factor bHLH11
RefseqNP_849566.12e-75transcription factor bHLH11
SwissprotQ8W2F23e-77BH011_ARATH; Transcription factor bHLH11
TrEMBLC0SVL73e-75C0SVL7_ARATH; Putative uncharacterized protein At4g36060 (Fragment)
STRINGAT4G36060.17e-75(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36060.21e-61bHLH family protein